Body”s own molecular protection against arthritis discovered

Washington, May 19 (ANI): An international team of scientists has discovered that a natural molecule in the body counters the progression of osteoarthritis.

The findings from The Scripps Research Institute in California and the National Research Institute for Child Health and Development in Japan could one day lead to new therapies for some common diseases of aging.

The molecule the team studied, microRNA 140 (miR-140), is part of a recently discovered category of genetic molecules—”microRNAs” or “non-coding RNAs” which do not code for proteins, yet often play a vital role in gene expression.

“This is the first report showing the critical role of a specific non-coding RNA in bone development. Moreover, surprisingly, we observed that microRNA 140 acts against arthritis progression. This is among the first evidence that non-coding RNA plays a key role in age-dependent diseases,” said Hiroshi Asahara, associate professor of molecular and experimental medicine at Scripps Research.

The study was published in an advanced, online issue of the journal Genes & Development. (ANI)

Autism effects may be reversible

Washington, Apr 24 (ANI): In a new study, researchers have highlighted a mechanism for significant disruption of gene activity in autism that may be reversible.

The research by scientists at The George Washington University School of Medicine and Health Sciences’ Department of Biochemistry and Molecular Biology has been published in the journal Genome Medicine.

The study focuses on the differential expression of microRNA and addresses the issue of higher level regulation of gene expression in autism.

MicroRNA are recently discovered snippets of RNA (ribonucleic acid), each of which can inhibit the expression (and thus activity) of hundreds to more than a thousand genes. The effects of microRNA are also reversible by treatment with complementary “anti-sense” RNA.

Valerie Hu, Ph.D., professor of Biochemistry and Molecular Biology, with a GW graduate student and collaborators at the National Institute of Mental Health, identified changes in the profile of microRNAs between identical twins and sibling pairs, discordant for diagnosis of autism. They discovered that, despite using cells derived originally from blood, brain-specific and brain-related microRNAs were found to be differentially expressed in the autistic samples, and that these microRNAs could potentially regulate genes that control many processes known to be disrupted in autism. For example, differentially expressed microRNAs were found to regulate genes highly involved in neurological functions and disorders in addition to genes involved in gastrointestinal diseases, circadian rhythm signaling, and steroid hormone metabolism.

The study further shows that by treating the cells with “anti-sense” RNA antagonists (inhibitors) to specific microRNA or by employing mimics of a particular microRNA, one can reverse the pattern of expression of a given target gene regulated by that microRNA. (ANI)

Tiny pieces of silent RNA behind healing chronic wounds

Washington, Mar 23 (ANI): Scientists have found the reason behind why chronic wounds have trouble healing— tiny piece of RNA, called as miR-210.

In a new animal study, the Ohio State University researchers discovered that this RNA segment in wounds with limited blood flow lowers the production of a protein that is needed to encourage skin cells to grow and close over the sore.

In a parallel experiment using human skin cells, the researchers silenced the RNA segment with an experimental drug and saw those protein levels rise. The skin cells multiplied as a result.

The findings suggest that targeting this RNA segment with a drug that could be used topically on skin might offer new strategies for treating chronic wounds, which are sometimes fatal and cost the U.S. health-care system an estimated 25 billion dollars annually.

RNA in cells is responsible for using instructions from DNA to make proteins, but as miR-210 has a completely different role.

It is a microRNA, a small segment of RNA that blocks an important protein-building process.

The research involves wounds that are ischemic, that is, they heal very slowly or are in danger of never healing because they lack blood flow and oxygen at the wound site.

These types of wounds affect about 6.5 million patients each year, and are common complications of diabetes, high blood pressure, obesity and other conditions characterized by poor vascular health.

“When blood supply is inadequate, many things are deficient at the wound site, including oxygen. That leads to a condition called hypoxia. We have shown that hypoxia induces miR-210, which actually blocks the ability of the cells to proliferate, a step necessary for the wound-closure process,” said Chandan Sen.

After studying the effects of low oxygen on wound healing for years, researchers have now been able to identify the sequence of events connecting low oxygen and the inability of skin cells to grow.

Sen said this is the first publication to suggest microRNAs regulate the healing process in chronic wounds.

Sen and colleagues created ischemic and non-ischemic wounds on mouse skin for comparison.

In ischemic mouse wounds, the researchers observed that the hypoxic, or low-oxygen, conditions led to the presence of a specific type of protein called hypoxia inducible factor-1a, or HIF-1a.

This protein can turn genes on and off and, in this case, appears to influence the behaviour of at least one microRNA as well.

The presence of HIF-1a in low-oxygen conditions led to the activation of the miR-210, and that microRNA in turn lowered levels of the protein needed to kick skin cells into action. This protein is called E2F3.

On the other hand, the non-ischemic wounds on the mice showed abundant levels of the E2F3 protein and healed normally within about seven days.

The research appears in the online early edition of the Proceedings of the National Academy of Sciences. (ANI)

Fly eyes used to ‘see’ new proteins involved in memory

Washington, Aug 25 (ANI): Using the eyes of fruit flies, researchers from the US and Ireland have identified new proteins necessary for memory.

The discovery not only sheds light on this critical neurological process, but also provides information on a form of mental retardation in humans.

“Understanding translational control mechanisms in the brain teaches us how the brain learns and adapts, and will inform the design of treatments for specific types of neurologic disease,” said study co-author Dr. Anne-Marie Cziko, of the University of Arizona.

The scientists specifically found that the “fragile X mental retardation protein”, which plays a crucial role in the cellular processes involved in learning and memory, needs five other proteins to function normally.

They identified these proteins using an artificial system of increasing fragile X mental retardation protein in the eyes of fruit flies. Its high level leads to visible deformities in a fly’s eyes.

For testing the requirement of various candidate proteins for function of the fragile X mental retardation protein, the researchers genetically modified the flies to prevent them from making each candidate protein.

It was found that loss of any one of the five proteins caused the fruit fly’s eye to be significantly less deformed, revealing that each is required for function of the fragile X mental retardation protein.

As previous work suggested that the fragile X protein regulates gene expression via an important group of small RNAs called “microRNAs,” the scientists tested whether the proteins they identified were required for a specific microRNA named “bantam” to function in fruit flies.

The researchers conducted their experiments by removing copies of the identified proteins from the fly.

Instead of looking at the flies’ eyes, they looked inside the flies using a fluorescent protein that indicates how well bantam is functioning.

Surprisingly, the investigators found that none of the five proteins identified in the study had an effect on bantam.

To top it all, even the fragile X mental retardation protein didn’t have any effect on bantam.

This finding and the identification of the five new proteins that interact with the fragile X mental retardation protein give new insight into additional and alternative functions of fragile X mental retardation protein.

They also indicate the need for more study into the fragile X mental retardation protein’s function itself.

The study has been published in the journal Genetics. (ANI)

Scientists discover signaling pathway which ensures that plants remember to flower

Washington, August 21 (ANI): A team of scientists has discovered signaling pathway that ensures plants remember to flower, even without positive signals from the environment.

Scientists at the Max Planck Institute for Developmental Biology in Germany found the solution to the mystery that why do some plants blossom even when days are short and gray.

According to the researchers, an endogenous mechanism allows them to flower in the absence of external influences such as long days.

A small piece of RNA, a so-called microRNA, has a central role in this process, as a decline of its concentration in the shoot apex triggers flowering.

MicroRNAs are very short RNA snippets that have emerged in recent years as essential regulators of gene function in both plants and animals.

By binding to complementary motifs in a messenger RNA, they inhibit its translation into protein. This process thus blunts the activity of the corresponding gene.

In Tubingen, developmental biologists have discovered that the common wallcress, Arabidopsis, uses this regulatory mechanism to switch from vegetative to reproductive development.

A group of related regulators, the SPL proteins, play an important role in promoting the onset of flowering.

In young plants, high levels of microRNA156 prevent production of SPL proteins.

Jia-Wei Wang and colleagues demonstrate that independent of external cues, the concentration of the microRNA declines over time, like sand running through an hourglass.

When the microRNA concentration falls below a certain level, enough SPL proteins are produced to activate the flowering process even in the absence of other regulators that measure day length or external temperature.

This in turns allows a sufficiently old plant to flower, even in an unfavorable environment.

Interestingly, the SPLs do double duty, since they have supporting roles when plants flower in response to long days.

Furthermore, both the SPLs and other regulators eventually converge on a similar set of targets crucial for flowering.

According to Detlef Weigel, director at the Max Planck Institute for Developmental Biology, “Flowering is crucial for the long-term survival of plants. The redundancy of environment-dependent and independent mechanisms ensures that plants do not wait forever until flowering.” (ANI)

Indian-origin scientist finds genetic switch that may help treat vascular diseases

London, July 6 (ANI): Taking a big leap towards finding a treatment of vascular diseases, a team led by an Indian-origin scientist at the Gladstone Institute of Cardiovascular Disease (GICD) has discovered a key switch that makes stem cells turn into the type of muscle cells that reside in the wall of blood vessels.

Dr. Deepak Srivastava’s study claimed that the same switch could be used in the future to limit growth of vascular muscle cells that cause narrowing of arteries leading to heart attacks and strokes, limit formation of blood vessels that feed cancers, or make new blood vessels for organs that are not getting enough blood flow.

It was found that a tiny RNA molecule, called microRNA-145 (miR-145), not only had all the information necessary to turn a stem cell into a vascular smooth muscle cell (VSMC), but could also affect VSMCs in the adult artery.

VSMCs possess the unique property of dividing on their own when an artery is injured or during atherosclerosis, ultimately causing narrowing of the vessel leading to occlusion.

The researchers found that miR-145 and its sister microRNA, miR-143, work together to stop the pathologic division of VSMCs.

But in the setting of vessel disease, their activity was turned down, which made the VSMCs to divide and clog up the artery.

MicroRNAs are small RNA molecules that do not make protein, but instead affect that amount of protein synthesized by the cell from their target mRNAs-the blueprints for translating the genetic code into proteins.

The researchers found that miR-145 and miR-143 together controlled the synthesis of a network of “master regulators” that control VSMCs, and thereby were able to function as a central “switch” for the behaviour of these important cells.

“The ability of miR-145 to efficiently direct the cell fate of vascular smooth muscle cells from stem cells represents the power of these tiny microRNAs to exert major effects on cells. We hope that we can use this knowledge to control when the body makes or does not make new blood vessels,” Nature magazine quoted Srivastava as saying.

He added: “Our findings in this study offer insights into regulatory mechanisms that govern the differentiation and proliferation of smooth muscle. They have fundamental implications for the treatment of vessel diseases like atherosclerosis and also may be important for cancer.”

The study has been published in the current issue of the journal Nature. (ANI)

Progressive hearing loss in humans and mice linked to microRNA mutation

Washington, Apr 13 (ANI): By conducting parallel studies in human and mouse, two groups of scientists have found that a new kind of gene, called a microRNA, is linked with progressive hearing loss.

MicroRNA is a tiny fragment of RNA that affects the production of hundreds of other molecules within sensory hair cells of the inner ear.

One team, led by researchers from the Hospital Ramon y Cajal, Madrid, Spain, followed families who showed hearing loss.

The second team, led by researchers from the Wellcome Trust Sanger Institute, Cambridge, UK, examined a new line of mice, called diminuendo, that showed progressive hearing loss from an early age.

And in the end, the two groups shared their emerging data.

“We were able quite quickly to show that if the mice carried one copy of the gene variant they suffered progressive hearing loss, if they carried two variants they were profoundly deaf. The important questions were could we determine what the variant is and how does it exert its effect on hearing?” explained Professor Karen Steel, principal investigator of the programme at the Wellcome Trust Sanger Institute.

In their studies of families with progressive hearing loss, the Spanish team had suggested that the gene responsible lay on human chromosome 7.

For the study, both teams sequenced every gene in the equivalent genomic regions in human and mouse identified as implicated in hearing loss.

The sequencing showed that most of the genes in the region could not have any role to play in hearing loss.

However, each of the team found that a mutation in a microRNA gene called miR-96 was associated with the hearing loss.

“We know of a number of genes involved in deafness in humans and mice but, to our great surprise, this was one of a new class of genes called microRNAs,” explained Professor Miguel Angel Moreno-Pelayo, senior author on the human study.

Understanding the mechanism by which miR-96 leads to progressive hearing loss could provide clues to help develop therapies to improve the effects of progressive deafness, regardless of the trigger. (ANI)

Scientists move a step closer to creating safe embryonic-like stem cells

Washington, April 13 (ANI): Researchers at the University of California-San Francisco (UCSF) have successfully used tiny molecules called microRNAs to help turn adult mouse cells back to their embryonic state.

The researchers say that the reprogrammed cells have the capacity to become any cell type in the body.

Their finding suggests that it may soon be possible to replace retroviruses and even genes currently used in laboratory experiments to induce pluripotency in adult cells.

The researchers hope that their work may make potential stem cell-based therapies safer by eliminating the risks posed to humans by these DNA-based methods, including alteration of the genome and risk of cancer.

“Using small molecules such as microRNAs to manipulate cells will play a major role in the future of stem cell biology,” Nature magazine quoted senior author Dr. Robert Blelloch, of the Eli and Edythe Broad Center for Regeneration Medicine and Stem Cell Research at UCSF, as saying.

During the study, the researchers used a combination of microRNAs and retrovirus-introduced genes to transform fibroblast cells, found throughout the body of mice and humans, into pluripotent cells.

Previous methods for creating embryonic stem cell-like cells have relied on the introduction of DNA that encodes four proteins that play a role in the production of genes. The limitation of that method is that three of the four genes that code for these transcription factors – oct4, klf4 and c-myc – are oncogenes that promote the uncontrolled cell growth, which is characteristic of cancer.

In the current study, graduate student Robert Judson and his colleagues induced pluripotency using a combination of infection and transfection.

The infection involved introducing three viruses, each containing a transcription factor known to induce pluripotency. The transcription factor for c-myc was not included. The transfection involved a simple process in which the tiny microRNA molecules were mixed with a lipid, allowing them to pass through the cell membrane.

The researchers labelled the fibroblast cells, and found that the treated cells could be incorporated into a mouse embryo and become every cell type in the adult animal — including germline cells that would produce the next generation of mice.

“These are transient, non-coding molecules that do not incorporate into the genome, but promote self-replication and have the potential to induce pluripotency. They do their thing — turn a somatic cell into an embryonic stem cell-like one — and then they’re gone,” Blelloch says.

“MicroRNAs give us a new tool to manipulate the fate of cells,” Blelloch adds.

Blelloch’s team are presently working to replace all four transcription factors with microRNAs and conducting experiments that will reveal the mechanism by which these small molecules are able to induce pluripotency.

The researchers will also be looking to determine which microRNAs might be able to turn adult cells directly into particular adult cell types, by-passing the embryonic stem cell-like stage altogether.

“The goal now is to ensure the safety of induced pluripotent stem cells and to differentiate them into cells that can be used to repair damaged tissue and treat disease,” he says.

The study has been published in the journal Nature Biotechnology. (ANI)

Viruses engineered to target only cancer cells cure mice sans side effects

Washington, October 27 : Mayo Clinic researchers have come up with a method of controlling the viruses behind potential cancer therapeutics, so that they will not damage healthy tissues.

The researchers believe that such viruses can be restricted to specific tissues by engineering the virus”s genetic sequence with the aid of microRNAs.

They say that the microRNAs destabilize the virus”s genome, making it impossible for the virus to run amok.

“Our findings demonstrate a new tool for molecular medicine that should also help allay concern over the use of viruses as a therapeutic delivery system,” Nature Medicine quoted Dr. Stephen Russell, Mayo physician-scientist and lead author of the study, as saying.

MicroRNAs are the nucleotide snippets that are encoded by genes, but don”t end up as proteins. In many cases, they have a role in down-regulating different cellular genes.

The Mayo Clinic team say that they have been successful in engineering a virus to be responsive to microRNAs that are present in certain cell types, thereby redirecting it to recognize only cancer cells.

They say that the experimental mice that received the engineered virus were cured of established tumours, without suffering any ill effects.

The team say that the target sequences of microRNAs used in the study kept the virus from destroying muscle cells, while allowing viral replication to proceed in cancer cells.

That, according to the researchers, allowed the virus to completely cure mice with melanoma.

The researchers say microRNA target insertion may be a new way to make viruses safer for use in cancer therapy, and may lead to new methods of making safer vaccines. (ANI)