Poplars, just like humans, also feel stressed

Washington, May 7 (ANI): Just like humans, trees too, feel stressed. And scientists have now claimed that hormone suppression could help common poplars— cottonwoods and aspens—deal with stress.

Trees’ stress can come from a lack of water or too much water, from scarcity of a needed nutrient, from pollution or a changing climate.

A new study led by Michigan Technological University scientists, has identified the molecular mechanism that Populus—the scientific name for common poplars—uses to adapt to changing soil conditions, as well as some of the genes that turn the process off or on.

And now they look forward to apply what they’ve learned to find ways to use biotechnology or selective breeding to modify the trees to make them more stress-tolerant.

“Our hope is that by understanding how this works, we can manipulate the system so the plants can adapt faster and better to stressful conditions,” explained Dr. Victor Busov.

The researchers analysed thousands of genes in the Populus genome, the only tree genome that has been completely sequenced.

They were searching for the mechanism that regulates the plant’s decision to grow tall or to spread its roots out in an extensive underground exploration system that can sample the soil near and far until it finds what the rest of the plant needs.

The key players turned out to be a family of hormones called gibberellins, referred to by the scientists as GAs.

“GAs’ role in root development is poorly understood and the role of GAs in lateral root formation is almost completely unknown,” said Busov.

Lateral roots are the tangle of tiny roots that branch out from the primary root of a plant.

”They are the sponges, the ones that go looking for nutrients, for water—the ones that do most of the work,” explained Busov.

The researchers found that GAs interact with other plant hormones such as auxin to tell the plant whether to concentrate on reaching for the sky or on building a bigger, better network of roots under ground.

“The GAs and auxin are definitely talking, molecularly,” said Busov.

Growing poplar seedlings mutated to make them GA-deficient, the scientists compared their root and stem growth to others that contained moderate amounts of GAs and a control group of wild-type plants with normal GAs.

They found that the more GAs, the more a plant’s stem flourished, but its roots remained spindly.

When GA production was shut down, either by using mutants that lacked the necessary genes or by silencing the genes that form the molecular on-off switch, the resulting plants looked dwarfed, but their lateral roots grew luxuriant and full.

Application of GA to the GA-deficient dwarf plants rapidly reversed the process. The plants grew tall, but their lateral root systems shrivelled.

“Clearly, lack of the hormone promotes growth below ground, while the hormone itself promotes growth above ground. This is a natural mechanism that we don’t know much about. It’s always a tradeoff between growth above ground and growth below ground. Normally there is a fine balance, and this balance is a little disturbed under stress,” said Busov.

The study has been published in a recent issue of the journal The Plant Cell. (ANI)

Intelligent, creative computers come closer to reality

London, Apr 26 (ANI): Taking a leap towards intelligent and creative computers, researchers have now created a brain-like process of circuit evolution in an organic molecular layer that can solve complex problems.

The advance by the international research team from Japan and Michigan Technological University is the first time a brain-like “evolutionary circuit” has been realized.

This computer is massively parallel—the world””s fastest supercomputers can only process bits one at a time in each of their channels. Their circuit allows instantaneous changes of 300 bits.

Their processor can produce solutions to problems for which algorithms on computers are unknown, like predictions of natural calamities and outbreaks of disease.

To prove this unique feature, the researchers have mimicked two natural phenomena in the molecular layer—heat diffusion and the evolution of cancer cells.

The monolayer has intelligence— it can solve many problems on the same grid.

Their molecular processor heals itself if there is a defect, reports Nature.

This remarkable self-healing property comes from the self-organizing ability of the molecular monolayer.

No existing man-made computer has this property, but our brain does: if a neuron dies, another neuron takes over its function.

The work is described in the Nature Physics paper. (ANI)

Three genes linked to Lou Gehrig’s disease identified

Washington, Sep 10 (ANI): Researchers at Michigan Technological University have identified three genes that play a major role in the most common type of amyotrophic lateral sclerosis (ALS), generally known as Lou Gehrig’s disease.

The team of mathematicians, led by Shuanglin Zhang, isolated the genes from the many thousands scattered throughout human DNA.

Zhang noted that the discovery does not mean an end to ALS, but it could provide scientists with valuable clues as they search for a cure.

“I felt very urgent to find the genes for ALS,” Zhang said.

“This is very nice work. It’s very challenging to map genes for complex diseases, and while many statistical methods have been developed, most don’t work well in practice. Zhang’s group has developed a method to detect genes and gene-gene interaction in complex diseases and provided evidence that it works,” said Xiaofeng Zhu, an associate professor of epidemiology at Case Western Reserve University’s School of Medicine.

“Their findings will need to be confirmed by other researchers, but I think this will be very useful for the investigators who are trying to find genes underlying complex diseases such as ALS,” said Zhu.

According to the ALS Association, only about 10 percent of patients have familial ALS, a directly inherited form of the usually fatal neuromuscular disorder, while the remaining 90 percent are diagnosed with the sporadic form of the disease.

While everyone has the three genes in question, but in people with sporadic ALS, they differ from those in people who don’t have ALS.

The mathematicians were not surprised when they tracked down the location of the genes.

“Everybody has 23 chromosomes, and the three genes on chromosomes 2, 4, and 10 interact. If you have this combination of the three genes, you are at high risk of developing the disease. It’s really exciting, especially because my husband has sporadic ALS. Maybe they can find a cure by blocking the genes,” explained Zhang’s wife Qiuying Sha.

ALS destroys the nerves in the brain and spinal cord that control voluntary movement, eventually leading to paralysis.

Zhang’s team used a new statistical method to analyse the genetic codes of 547 individuals, 276 with sporadic ALS and 271 without.

The method, a two-locus interaction analysis approach, allows the researchers to identify multiple genes associated with a complex illness.

The data set they analyzed was provided by National Institute of Neurological Disorders and Stroke (NINDS) Human Genetics Resource Center at the Coriell Institute, a publicly funded “bank” or repository for human cells, DNA samples, clinical data, and other information that aims to accelerate research on the genetics of nervous system disorders.

The study has been published in the open access journal BMC Medical Genetics. (ANI)

New mattress to double the effectiveness of CPR

Washington, July 12 (ANI): In a breakthrough innovation, students at Michigan Technological University (MTU) have designed a special mattress that can make cardiopulmonary resuscitation (CPR) nearly twice as effective as an ordinary hospital mattress.

The young inventors have found that the mattress facilitates faster and more effective CPR, and are working towards releasing it in the market.

A standard hospital mattress, with six or more inches of foam, is pliable and cushiony.

Pushing down to administer CPR is like pushing on a big sponge, which makes the force to go into the mattress, and not the body lying on it.

But the new mattress has solved this problem, as it could be easily made firm by sucking the air out of the foam by just pushing button.

It makes use of some tubing, a little motor and a vacuum pump, and takes just ten seconds to work.

The researchers observed that only 43 percent of the CPR load winds up reaching the heart with a standard mattress, and it rises to 52 percent with a board underneath the mattress.

But with the MTU students’ design, it leaps to 81 percent.

One of the students in the team has founded a company, and is working to get this mattress into hospitals, especially in emergency rooms.

The students expect to have a patent by September 2009, and have been talking with a number of companies that have experience bringing medical products to market. (ANI)

Cabbage fuel-powered jets can cut carbon emissions by 84pct

Washington, June 20 (ANI): Jet fuel’s grave carbon emissions can be reduced by about 84 per cent by refining it from the seeds of a lowly weed, which is a cousin to the cabbage, says a Michigan Technological University researcher.

David Shonnard, Robbins Chair Professor of Chemical Engineering, came to this conclusion after analysing the carbon dioxide emissions of jet fuel made from camelina oil over the course of its life cycle, from planting to tailpipe.

“Camelina jet fuel exhibits one of the largest greenhouse gas emission reductions of any agricultural feedstock-derived biofuel I’ve ever seen. This is the result of the unique attributes of the crop-its low fertilizer requirements, high oil yield, and the availability of its coproducts, such as meal and biomass, for other uses,” he said.

Originated in Europe, Camelina sativa is a member of the mustard family, along with broccoli, cabbage and canola.

Also known as false flax or gold-of-pleasure, it thrives in the semi-arid conditions of the Northern Plains. The camelina used for the research was grown in Montana.

Shonnard points out that it is possible to convert oil from camelina to a hydrocarbon green jet fuel that meets or exceeds all petroleum jet fuel specifications.

According to the researcher, the fuel is a “drop-in” replacement that is compatible with the existing fuel infrastructure, from storage and transportation to aircraft fleet technology.

“It is almost an exact replacement for fossil fuel. Jets can’t use oxygenated fuels like ethanol; they have to use hydrocarbon replacements,” Shonnard said.

Given that camelina needs little water or nitrogen to flourish, Shonnard says that it can be grown on marginal agricultural lands.

“Unlike ethanol made from corn or biodiesel made from soy, it won’t compete with food crops. And it may be used as a rotation crop for wheat, to increase the health of the soil,” the researcher added.

Shonnard conducted the life cycle analysis for UOP LLC, of Des Plaines, Ill., a subsidiary of Honeywell and a provider of oil refining technology.

When asked whether people will soon be flying in plant-powered aircraft, Tom Kalnes, a senior development associate for UOP in its renewable energy and chemicals research group, said: “It depends.”

Kalnes added: “There are a few critical issues. The most critical is the price and availability of commercial-scale quantities of second generation feedstocks.”

He further said that more farmers would be require to be convinced to grow a new crop, and refiners must want to process it.

“But if it can create jobs and income opportunities in rural areas, that would be wonderful,” he said. (ANI)

New technique to make bacteria glow under light may help fight against breast cancer

Washington, March 8 (ANI): Michigan Technological University scientists have come up with a way to make a strain of E. coli glow under fluorescent light, a technique that may one day help track down all sorts of pathogens, and even prove beneficial in fight against breast cancer.

Associate Professor of Chemistry Haiying Liu, who led the research project, points out that E. coli bacteria are naturally found in animal intestines and are usually harmless, but when virulent strains contaminate food, they can cause serious illness and even death.

Liu’s trick takes advantage of E. coli’s affinity for the sugar mannose.

During the study, the research team attached mannose molecules to specially engineered fluorescent polymers, and stirred them into a container of water swimming with E. coli.

The researchers said that microscopic hairs on the bacteria, called pili, hooked onto the mannose molecules like Velcro, effectively coating the bacteria with the polymers.

They later shined white light onto E. coli colonies growing in the solution, and the bugs lit up like blue fireflies.

“They became very colorful and easy to see under a microscope,” said Liu.

The researcher says that this approach may help identify a wide array of pathogens by mixing and matching from a library of different sugars and polymers, which fluoresce different colours under different frequencies of light.

If blue means E. coli, they add, fuchsia may one day mean influenza.

Liu is adapting the technique to combat breast cancer also. In place of mannose, he plans to link the fluorescent polymers to a peptide that homes in on cancer cells.

He says that upon introduction to the vascular system, the polymers would travel through the body, stick to tumour cells, and then illuminated by a type of infrared light that shines through human tissue.

The researcher says that the glowing polymers would provide a beacon to pinpoint the location of the malignant cells, and allow surgeons to easily identify and remove malignant cells while minimizing damage to healthy tissue.

An article on the team’s work on E. coli has been published in the journal Chemistry. (ANI)