Spare gene in fish provides raw materials for evolution of new Traits

Washington, September 4 (ANI): In a new research, scientists have discovered that a duplicate copy of a gene involved in embryonic development of fish has taken up a newer role in the evolution of fish scales.

Scientists have suspected that spare parts in the genome-extra copies of functional genes that arise when genes or whole genomes get duplicated-might sometimes provide the raw materials for the evolution of new traits.

Now, researchers say that they have discovered a prime example of this in fish.

The researchers show that a duplicate copy of a gene involved in embryonic development has taken up a newer and decidedly less essential role in the development of fish scales.

Zebrafish carrying a mutant version of that extra fibroblast growth factor receptor 1 (fgfr1) gene show decreases in their scale formation.

What’s more, the spare fgfr1 gene is at the root of similar scale loss seen in domesticated carp, which have been selectively bred by humans for the last 2,000 years.

“Our finding is an excellent case for (gene) duplication supporting diverse forms,” said Matthew Harris of the Max Planck Institute for Developmental Biology.

“By ‘tweaking’ the use of one of the two copies of the fish fgfr1, the teleost order that contains zebrafish and carp have a specialized ‘toolbox’ gene that now controls adult-specific variation in form,” added Nicolas Rohner, also of the Max Planck Institute.

Fish species outnumber all other vertebrates combined and include many with spectacular features to match the diverse environments in which they live, according to Harris and Rohner.

Teleost fish in particular represent the largest assemblage of vertebrates, comprising over 26,000 species with astonishing diversity in their form and physiology.

Although little is known about the genetic basis of that diversity, it is clear that gene duplication is commonplace within teleost groups, providing a source of genetic raw material for selection.

To further explore in the new study, the researchers first examined mutant strains of zebrafish in search of those with changes to their fins, skulls, or scales, all structures that tend to vary among species.

They focused their attention on one with fewer scales and in an unusual pattern-an abnormality they traced to fgfr1.

“We were surprised to find severe coding mutations in such an important developmental gene to cause an adult-specific and viable phenotype,” Harris said.

Further study showed the reason why: zebrafish maintain two copies of fgfr1 that function redundantly during embryonic development. One of those two genes is also required for the formation of the scales in juveniles. (ANI)

Scientists discover elephant shark can see color much like humans can

Washington, March 18 (ANI): Scientists have discovered that the elephant shark, a primitive deep-sea fish that belongs to the oldest living family of jawed vertebrates, can see color much like humans can.

This discovery may enhance scientists’ understanding of how color vision evolved in early vertebrates over the last 450 million years of evolution.

“It was unexpected that a ‘primitive’ vertebrate like the elephant shark had the potential for color vision like humans,” said Byrappa Venkatesh, a scientist at Singapore’s Institute of Molecular and Cell Biology (IMCB), who with David Hunt, from the Institute of Ophthalmology at University College London (UCL), headed the research team responsible for this surprising discovery.

“The discovery shows that it has acquired the traits for color vision during evolution in parallel with humans,” he added.

The research team found that the elephant shark had three cone pigments for color vision and, like humans, it accomplished this through gene duplication.

Dr. Venkatesh said that the finding underscores the research utility of the elephant shark, which IMCB scientists proposed in 2005 as a valuable reference genome to understand the human genome.

In several scientific publications, Dr. Venkatesh’s team has described research showing that the human DNA sequence was more similar to elephant shark than to any other fish.

According to Dr. Venkatesh, “We expect the sequencing of the whole genome of the elephant shark to be completed by early 2010, the availability of which will then enable scientists to explore the important functional elements in both the human and elephant shark genome that have remained unchanged during the last 450 million years of evolution.” (ANI)